* corresponding author(s), names of students and staffs of our lab are underlined.
FY 2022
- Hayakawa M+, Tokuda M+, Kaneko K+, Nakamichi K+, Yamamoto Y+, Kamijo T+, Umeki H+, Chiba R, Yamada R, Mori M, Yanagiya K, Moriuchi R*, Yuki M, Dohra H, Futamata H, Ohkuma M, Kimbara K, Shintani M* (+equally contributed), Hitherto-Unnoticed Self-Transmissible Plasmids Widely Distributed among Different Environments in Japan, Applied and Environmental Microbiology, in press, doi:10.1128/aem.01114-22
- Ikeda Y, Kishimoto M, Shintani M, Yoshida N* 2022 Oligotrophic gene expression in Rhodococcus erythropolis N9T-4 under various nutrient conditions, Microorganisms, 10(9):1725. doi:10.3390/microorganisms10091725
FY 2021
- Shintani M+, Suzuki H+, Nojiri H, Suzuki M+* (+ equally contributed) 2022 Precise classification of antimicrobial resistance-associated IncP-2 megaplasmids for molecular epidemiological studies on Pseudomonas species, Journal of Antimicrobial Chemotherapy, 77(4):1203-1205. doi:10.1093/jac/dkac006
-
Aktar S, Okamoto Y, Ueno S, Tahara YO, Imaizumi M, Shintani M, Miyata M, Futamata H, Nojiri H, Tashiro Y*. 2021. Incorporation of plasmid DNA into bacterial membrane vesicles by peptidoglycan defects in Escherichia coli, Frontiers in Microbiology, 12:747606. doi:10.3389/fmicb.2021.747606
- Current Microbiology, 78(8): 3268-3276. doi: 10.1007/s00284-021-02561-2.
FY 2020
- Effects of environmental factors and coexisting substrates on PAH degradation and transcriptomic responses of the defined bacterial consortium OPK. Environmental Pollution, 277:116769. doi: 10.1016/j.envpol.2021.116769.
- Plant Species-Dependent Increased Abundance and Diversity of IncP-1 Plasmids in the Rhizosphere: New Insights Into Their Role and Ecology. Frontiers in Microbiology, 11:590776. doi: 10.3389/fmicb.2020.590776. 2020 (+equally contributed).
- Takaki K, Tahara YO, Nakamichi N, Hasegawa Y, Shintani M, Ohkuma M, Miyata M, Futamata H, Tashiro Y*,2020, Multilamellar and multivesicular outer membrane vesicles produced by a Buttiauxella agrestis tolB mutant “, Applied and Environmental Microbiology, 86(20):e01131-20. doi: 10.1128/AEM.01131-20.
- , , , , , , , , , , ,
- Determination of Plasmid pSN1216-29 Host Range and the Similarity in Oligonucleotide Composition Between Plasmid and Host Chromosomes”Frontiers in Microbiology, 11:1187. doi: 10.3389/fmicb.2020.01187. (+equally contributed)
FY 2019
- Miyoshi Y, Okada J, Urata T, Shintani M*, Kimbara K*,2020, “A rotational slurry bioreactor accelerates biodegradation of A-fuel in oil-contaminated soil even under low temperature conditions”, Microorganisms, 8(2):291. doi: 10.3390/microorganisms8020291.
- Ikegaya R, Shintani M, Kimbara K, Fukuda M, Yoshida N*, 2020, “Identification of a transcriptional regulator for oligotrophy-responsive promoter in Rhodococcus erythropolis N9T-4″, Bioscience, Biotechnology, and Biochemistry, 84(4):865-868.
- Maejima Y, Iino T, Muraguchi Y, Fukuda K, Ohkuma M, Suzuki T, Moriuchi R, Dohra H, Kimbara K, Shintani M*, 2020, “Chryseotalea sanaruensis gen. nov., sp., nov., a member of the family Cytophagaceae, isolated from a brackish lake in Hamamatsu Japan“, Current Microbiology, 77(2):306-312.
- Miyazawa D, Thanh LTH, Tani A, Shintani M*, Loc NH, Hatta T, Kimbara K*, 2019. “Isolation and characterization of genes responsible for naphthalene degradation from thermophilic naphthalene degrader, Geobacillus sp. JF8“, Microorganisms, 8(1):44. doi: 10.3390/microorganisms8010044.
- Ngoc Thi TV, Hoang Sinh DD, Ha Thanh LT, Huy ND, Tue NH, Shintani M, Kimbara K*, Loc NH*. “Cloning, expression and characterization of catechol 1,2-dioxygenase from Burkholderia cepacia“, Journal of General and Applied Microbiology, in press. doi: 10.2323/jgam.2019.06.002.
- Maejima Y, Iino T, Muraguchi Y, Ohkuma M, Kimbara K, Shintani M.* 2019, “Algoriphagus sanaruensis sp. nov., a member of the family Cyclobacteriaceae, isolated from a brackish lake in Hamamatsu, Japan”, International Journal of Systematic and Evolutionary Microbiology, 69(7):2108-2113. doi: 10.1099/ijsem.0.003447.
- Thanh LTH, Thi TVN, Shintani M, Moriuchi R, Dohra H, Loc NH, Kimbara K* 2019,“Isolation and characterization of a moderate thermophilic Paenibacillus naphthalenovorans strain 4B1 capable of degrading dibenzofuran from dioxin-contaminated soil in Vietnam.”,
Journal of Bioscience and Bioengineering, 128(5):571-577. doi: 10.1016/j.jbiosc.2019.05.006.
FY 2018
- Shintani M*, Ohkuma M, Kimbara K. 2019
“High-resolution comparison of bacterial conjugation frequencies“,
Journal of Visualized Experiments, (143), e57812, doi:10.3791/57812 - Yanagiya K+, Maejima Y+, Nakata H+, Tokuda M, Moriuchi R, Dohra H, Inoue I, Ohkuma M, Kimbara K, Shintani, M* (+equally contributed), “Novel self-transmissible and broad-host-range plasmids exogenously captured from anaerobic granules or cow manure”, Frontiers in Microbiology, 2018, 9: 2602, doi: 10.3389/fmicb.2018.02602
- Shintani M, Sugiyama K, Sakurai T, Yamada K, Kimbara K*. 2019 “Biodegradation of A-fuel oil in soil samples with bacterial mixtures of Rhodococcus and Gordonia strains under low temperature conditions”, Journal of Bioscience and Bioengineering. 127(2):197-200, pii: S1389-1723(18)30309-8. doi: 10.1016/j.jbiosc.2018.07.018.
FY 2017
- Maejima Y, Kushimoto K, Muraguchi Y, Fukuda K, Miura T, Yamazoe A, Kimbara K, Shintani M*. “Proteobacteria and Bacteroidetes are major phyla of filterable bacteria passing through 0.22 μm pore size membrane filter, in Lake Sanaru, Hamamatsu, Japan”, 2018. Bioscience, Biotechnology, and Biochemistry. 82(7):1260-1263.
- Masuda S, Suzuki Y, Fujitani Y, Mitsui R, Nakagawa T, Shintani M, Tani A*. 2018. “Lanthanide-dependent regulation of methylotrophy in Methylobacterium aquaticum strain 22A”, mSphere. 3(1). pii: e00462-17. doi: 10.1128/mSphere.00462-17.
- Sakuda A, Suzuki-Minakuchi C, Matsui K, Takahashi Y, Okada K, Yamane H, Shintani M*, Nojiri H*. 2018. “Divalent cations increase the conjugation efficiency of the incompatibility P-7 group plasmid pCAR1 among different Pseudomonas hosts”, Microbiology. 164:20-27. doi: 10.1099/mic.0.000583.
- Nakazawa S, Haramiishi A, Fukuda K, Kanayama Y, Watanabe T, Yuki M, Ohkuma M, Takeda K, Kimbara K, Shintani M*. 2017. “Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions”, PLoS One. 12(10):e0186248. doi: 10.1371/journal.pone.0186248. eCollection 2017. Erratum in: PLoS One. 2018 Jan 11;13(1):e0191393.
- Wanapaisan P, Laothamteep N, Vejarano F, Chakraborty J, Shintani M, Muangchinda C, Morita T, Suzuki-Minakuchi C, Inoue K, Nojiri H*, Pinyakong O*. 2018. “Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium”, Journal of Hazardous Materials, 342:561-570. doi: 10.1016/j.jhazmat.2017.08.062.
2016年度
- Tashiro Y, Hasegawa Y, Shintani M, Takaki K, Ohkuma M, Kimbara K, Futamata H. 2017. “Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells”, Frontiers in Microbiology. 8:571. doi: 10.3389/fmicb.2017.00571. eCollection 2017.
- Shintani M. 2017. “The behavior of mobile genetic elements (MGEs) in different environments”, Bioscience, Biotechnology, Biochemisty. 81(5):854-862. doi: 10.1080/09168451.2016.1270743.
- Muraguchi Y, Kushimoto K, Ohtsubo Y, Suzuki T, Dohra H, Kimbara K, Shintani
M. 2016. “Complete genome sequence of Algoriphagus sp. strain M8-2, isolated from a brackish lake”, Genome Announcement 4(3) pii: e00347-16. doi: 10.1128/genomeA.00347-16.
2015年度
- Yanagida K, Sakuda A, Suzuki-Minakuchi C, Shintani M, Matsui K, Okada K
Nojiri H*. 2016. “Comparisons of the transferability of plasmids pCAR1, pB10, R388, and NAH7 among Pseudomonas putida at different cell densities”,
Bioscience, Biotechnology, and Biochemistry, 80(5):1020-3. doi: 10.1080/09168451.2015.1127131. - Yun C-S#, Takahashi Y#, Shintani M*, Takeda T, Suzuki-Minakuchi C, Okada
K, Yamane H, Nojiri H*. (#contributed equally to this work), 2016.
“MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome
regulate host transcriptome cooperatively but differently”,
Applied and Environmental Microbiology, 82(3)832-842. doi:10.1128/AEM.03071-15 - Suzuki S#, Shintani M#, Sanchez ZK, Kimura K, Numata M, Yamazoe A, Kimbara
K*. (#contributed equally to this work), 2015. “Effects of phosphate addition on methane fermentation in the batch and upflow anaerobic sludge blanket (UASB) reactors”, Applied Microbiology and Biotechnology, 99(24):10457-10466. doi:10.1007/s00253-015-6942-1 - Tani A, Ogura Y, Hayashi T, Kimbara K*. 2015. “Complete genome sequence of Methylobacterium aquaticum strain 22A, isolated from Racomitrium japonicum moss”, Genome Announcement, 3(2). pii: e00266-15. doi: 10.1128/genomeA.00266-15.
- Tani A, Sahin N, Fujitani Y, Kato A, Sato K, Kimbara K*. 2015.
“Methylobacterium species promoting rice and barley growth and interaction
specificity revealed with whole-cell matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF/MS) analysis”, PLoS One. 10(6):e0129509. doi: 10.1371/journal.pone.0129509. - Tani A, Ogura Y, Hayashi T, Kimbara K*. 2015. “Bacterial-biota dynamics of eight bryophyte species from different ecosystems”, Saudi J Biol Sci. 2015 Mar;22(2):204-10. doi: 10.1016/j.sjbs.2014.07.009.
- Yuki M, Kuwahara H, Shintani M, Izawa K, Sato T, Starns D, Hongoh Y, Ohkuma
M*. 2015. “Dominant ectosymbiotic bacteria of cellulolytic protists in the termite
gut also have the potential to digest lignocellulose”, Environmental Microbiology, 2015 Jun 16. doi: 10.1111/1462-2920.12945.
2014年度
- Suzuki-Minakuchi C, Hirotani R, Shintani M, Takeda T, Takahashi Y, Matsui
K, Vasileva D, Yun CS, Okada K, Yamane H, Nojiri H. 2015.
Effects of three different nucleoid-associated proteins encoded on the
IncP-7 plasmid pCAR1 on the host Pseudomonas putida KT2440.
Applied and Environmental Microbiology, 81(8): 2869-2880. - Takahashi Y*, Shintani M*, Takase N, Kazo Y, Kawamura F, Hara H, Nishida
H, Okada K, Yamane H, Nojiri H. (contributed equally to this work), 2015.
Modulation of primary cell function of host Pseudomonas bacteria by the
conjugative plasmid pCAR1.
Environmental Microbiology, 17(1):134-155. doi:10.1111/1462-2920.12515 - Fukuda K, Hosoyama A, Tsuchikane K, Ohji S, Yamazoe A, Fujita N, Shintani
M, Kimbara K. 2014.
Complete genome sequence of polychlorinated biphenyl degrader Comamonas testosteroni TK102 (NBRC 109938).
Genome Announcement, 2(5). doi:10.1128/genomeA.00865-14.
2013年度
- Shintani M, Ohtsubo Y, Fukuda K, Hosoyama A, Ohji S, Yamazoe A, Fujita
N, Nagata Y, Tsuda M, Hatta T, Kimbara K. 2014.
Complete genome sequence of the thermophilic PCB degrader Geobacillus sp. JF8 (NBRC 109937)
Genome Announcement, 2(1): doi:10.1128/genomeA.01213-13 - Shintani M, Matsui K, Inoue JI, Hosoyama A, Ohji S, Yamazoe A, Nojiri H,
Kimbara K, Ohkuma M. 2014.
Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9
plasmids in a soil bacterial community.
Applied and Environmental Microbiology, 80(1): 138-145. - Shintani M, Hosoyama A, Ohji S, Tsuchikane K, Takarada H, Yamazoe A, Fujita
N, Nojiri H. 2013.
Complete genome sequence of the carbazole degrader Pseudomonas resinovorans strain CA10 (NBRC 106553).
Genome Announcement, 1(4): doi:10.1128/genomeA.00488-13.
2012年度
- Sanchez Z, Tani A, Kimbara K. 2013.
Extensive reduction in cell viability and enhanced matrix production in
Pseudomonas aeruginosa PAO1 flow biofilms treated with D-amino acid mixture.
Applied and Environmental Microbiology, 79(4): 1396-1399. - Sanchez Z, Tani A, Suzuki N, Kariyama R, Kumon H, Kimbara K. 2013.
Assessment of change in biofilm architecture by nutrient concentration
using a multichannel microdevice flow system.
Journal of Bioscience and Bioengineering, 115(3): 326-331. - Miyakoshi M, Shintani M, Inoue K, Terabayashi T, Sai F, Ohkuma M, Nojiri
H, Nagata Y, Tsuda M. 2012.
ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of
IncP-7 plasmids.
Environmental Microbiology, 14(11): 2946-2959. - Tani A, Sahin N, Matsuyama Y, Enomoto T, Nishimura N, Yokota A, Kimbara
K. 2012.
High-throughput identification and screening of novel Methylobacterium species using whole-cell MALDI-TOF/MS analysis.
PLoS One, 7(3): e33800. - Tani A, Takai Y, Suzukawa I, Akita M, Murase H, Kimbara K. 2012.
Practical application of methanol-mediated mutualistic symbiosis between Methylobacterium species and a roof greening moss, Racomitrium japonicum.
PLoS One, 2012;7(3):e33800. - 新谷政己,李美英,松井一泰,岡田憲典,野尻秀昭. 2012.
異なる栄養条件下におけるプラスミドの接合伝達頻度の比較解析
環境バイオテクノロジー学会誌, 12(2): 163-167