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Peer reviewed papers

* corresponding author(s), names of students and staffs of our lab are underlined.

FY 2020

FY 2019

FY 2018

FY 2017

  • Maejima Y, Kushimoto K, Muraguchi Y, Fukuda K, Miura T, Yamazoe A, Kimbara K, Shintani M*.  “Proteobacteria and Bacteroidetes are major phyla of filterable bacteria passing through 0.22 μm pore size membrane filter, in Lake Sanaru, Hamamatsu, Japan”, 2018. Bioscience, Biotechnology, and Biochemistry. 82(7):1260-1263.
  • Masuda S, Suzuki Y, Fujitani Y, Mitsui R, Nakagawa T, Shintani M, Tani A*. 2018. “Lanthanide-dependent regulation of methylotrophy in Methylobacterium aquaticum strain 22A”, mSphere. 3(1). pii: e00462-17. doi: 10.1128/mSphere.00462-17.
  • Sakuda A, Suzuki-Minakuchi C, Matsui K, Takahashi Y, Okada K, Yamane H, Shintani M*, Nojiri H*. 2018. “Divalent cations increase the conjugation efficiency of the incompatibility P-7 group plasmid pCAR1 among different Pseudomonas hosts”, Microbiology. 164:20-27. doi: 10.1099/mic.0.000583.
  • Nakazawa S, Haramiishi A, Fukuda K, Kanayama Y, Watanabe T, Yuki M, Ohkuma M, Takeda K, Kimbara K, Shintani M*. 2017.  “Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions”, PLoS One. 12(10):e0186248. doi: 10.1371/journal.pone.0186248. eCollection 2017. Erratum in: PLoS One. 2018 Jan 11;13(1):e0191393.
  • Wanapaisan P, Laothamteep N, Vejarano F, Chakraborty J, Shintani M, Muangchinda C, Morita T, Suzuki-Minakuchi C, Inoue K, Nojiri H*, Pinyakong O*. 2018. “Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium”, Journal of Hazardous Materials, 342:561-570. doi: 10.1016/j.jhazmat.2017.08.062.

2016年度

  • Tashiro Y, Hasegawa Y, Shintani M, Takaki K, Ohkuma M, Kimbara K, Futamata H. 2017. “Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells”, Frontiers in Microbiology. 8:571. doi: 10.3389/fmicb.2017.00571. eCollection 2017.
  • Shintani M. 2017. “The behavior of mobile genetic elements (MGEs) in different environments”, Bioscience, Biotechnology, Biochemisty. 81(5):854-862. doi: 10.1080/09168451.2016.1270743.
  • Muraguchi Y, Kushimoto K, Ohtsubo Y, Suzuki T, Dohra H, Kimbara K, Shintani
    M. 2016. “Complete genome sequence of Algoriphagus sp. strain M8-2, isolated from a brackish lake”, Genome Announcement 4(3) pii: e00347-16. doi: 10.1128/genomeA.00347-16.

2015年度

  • Yanagida K, Sakuda A, Suzuki-Minakuchi C, Shintani M, Matsui K, Okada K
    Nojiri H*. 2016. “Comparisons of the transferability of plasmids pCAR1, pB10, R388, and NAH7 among Pseudomonas putida at different cell densities”,
    Bioscience, Biotechnology, and Biochemistry, 80(5):1020-3. doi: 10.1080/09168451.2015.1127131.
  • Yun C-S#, Takahashi Y#, Shintani M*, Takeda T, Suzuki-Minakuchi C, Okada
    K, Yamane H, Nojiri H*. (#contributed equally to this work), 2016.
    “MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome
    regulate host transcriptome cooperatively but differently”,
    Applied and Environmental Microbiology, 82(3)832-842. doi:10.1128/AEM.03071-15
  • Suzuki S#, Shintani M#, Sanchez ZK, Kimura K, Numata M, Yamazoe A, Kimbara
    K*. (#contributed equally to this work), 2015. “Effects of phosphate addition on methane fermentation in the batch and upflow anaerobic sludge blanket (UASB) reactors”, Applied Microbiology and Biotechnology, 99(24):10457-10466. doi:10.1007/s00253-015-6942-1
  • Tani A, Ogura Y, Hayashi T, Kimbara K*. 2015. “Complete genome sequence of Methylobacterium aquaticum strain 22A, isolated from Racomitrium japonicum moss”, Genome Announcement, 3(2). pii: e00266-15. doi: 10.1128/genomeA.00266-15.
  • Tani A, Sahin N, Fujitani Y, Kato A, Sato K, Kimbara K*. 2015.
    “Methylobacterium species promoting rice and barley growth and interaction
    specificity revealed with whole-cell matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF/MS) analysis”, PLoS One. 10(6):e0129509. doi: 10.1371/journal.pone.0129509.
  • Tani A, Ogura Y, Hayashi T, Kimbara K*. 2015. “Bacterial-biota dynamics of eight bryophyte species from different ecosystems”, Saudi J Biol Sci. 2015 Mar;22(2):204-10. doi: 10.1016/j.sjbs.2014.07.009.
  • Yuki M, Kuwahara H, Shintani M, Izawa K, Sato T, Starns D, Hongoh Y, Ohkuma
    M*. 2015. “Dominant ectosymbiotic bacteria of cellulolytic protists in the termite
    gut also have the potential to digest lignocellulose”, Environmental Microbiology, 2015 Jun 16. doi: 10.1111/1462-2920.12945.

2014年度

  • Suzuki-Minakuchi C, Hirotani R, Shintani M, Takeda T, Takahashi Y, Matsui
    K, Vasileva D, Yun CS, Okada K, Yamane H, Nojiri H. 2015.
    Effects of three different nucleoid-associated proteins encoded on the
    IncP-7 plasmid pCAR1 on the host Pseudomonas putida KT2440.
    Applied and Environmental Microbiology, 81(8): 2869-2880.
  • Takahashi Y*, Shintani M*, Takase N, Kazo Y, Kawamura F, Hara H, Nishida
    H, Okada K, Yamane H, Nojiri H. (contributed equally to this work), 2015.
    Modulation of primary cell function of host Pseudomonas bacteria by the
    conjugative plasmid pCAR1.
    Environmental Microbiology, 17(1):134-155. doi:10.1111/1462-2920.12515
  • Fukuda K, Hosoyama A, Tsuchikane K, Ohji S, Yamazoe A, Fujita N, Shintani
    M, Kimbara K. 2014.
    Complete genome sequence of polychlorinated biphenyl degrader Comamonas testosteroni TK102 (NBRC 109938).
    Genome Announcement, 2(5). doi:10.1128/genomeA.00865-14.

2013年度

  • Shintani M, Ohtsubo Y, Fukuda K, Hosoyama A, Ohji S, Yamazoe A, Fujita
    N, Nagata Y, Tsuda M, Hatta T, Kimbara K. 2014.
    Complete genome sequence of the thermophilic PCB degrader Geobacillus sp. JF8 (NBRC 109937)
    Genome Announcement, 2(1): doi:10.1128/genomeA.01213-13
  • Shintani M, Matsui K, Inoue JI, Hosoyama A, Ohji S, Yamazoe A, Nojiri H,
    Kimbara K, Ohkuma M. 2014.
    Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9
    plasmids in a soil bacterial community.
    Applied and Environmental Microbiology, 80(1): 138-145.
  • Shintani M, Hosoyama A, Ohji S, Tsuchikane K, Takarada H, Yamazoe A, Fujita
    N, Nojiri H. 2013.
    Complete genome sequence of the carbazole degrader Pseudomonas resinovorans strain CA10 (NBRC 106553).
    Genome Announcement, 1(4): doi:10.1128/genomeA.00488-13.

2012年度

  • Sanchez Z, Tani A, Kimbara K. 2013.
    Extensive reduction in cell viability and enhanced matrix production in
    Pseudomonas aeruginosa PAO1 flow biofilms treated with D-amino acid mixture.
    Applied and Environmental Microbiology, 79(4): 1396-1399.
  • Sanchez Z, Tani A, Suzuki N, Kariyama R, Kumon H, Kimbara K. 2013.
    Assessment of change in biofilm architecture by nutrient concentration
    using a multichannel microdevice flow system.
    Journal of Bioscience and Bioengineering, 115(3): 326-331.
  • Miyakoshi M, Shintani M, Inoue K, Terabayashi T, Sai F, Ohkuma M, Nojiri
    H, Nagata Y, Tsuda M. 2012.
    ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of
    IncP-7 plasmids.
    Environmental Microbiology, 14(11): 2946-2959.
  • Tani A, Sahin N, Matsuyama Y, Enomoto T, Nishimura N, Yokota A, Kimbara
    K. 2012.
    High-throughput identification and screening of novel Methylobacterium species using whole-cell MALDI-TOF/MS analysis.
    PLoS One, 7(3): e33800.
  • Tani A, Takai Y, Suzukawa I, Akita M, Murase H, Kimbara K. 2012.
    Practical application of methanol-mediated mutualistic symbiosis between Methylobacterium species and a roof greening moss, Racomitrium japonicum.
    PLoS One, 2012;7(3):e33800.
  • 新谷政己,李美英,松井一泰,岡田憲典,野尻秀昭. 2012.
    異なる栄養条件下におけるプラスミドの接合伝達頻度の比較解析
    環境バイオテクノロジー学会誌, 12(2): 163-167