- Matsumoto, A., Daigaku, Y*., and Tsubouchi, T*. (2025). Polymerase-usage sequencing identifies initiation zones with less bias across S phase in mouse embryonic stem cells. J. Biochem. doi: 10.1093/jb/mvae097
- Kurashima, K., Kamikawa, Y., and Tsubouchi, T*. (2024). Embryonic stem cells maintain high origin activity and slow forks to coordinate replication with cell cycle progression. EMBO Rep. 25,3757 – 3776. doi.org/10.1038/s44319-024-00207-5
- Kumazaki, T., Yonekawa, C., and Tsubouchi, T*. (2023). Microscopic analysis of cell fate alteration induced by cell fusion. Cell. Reprogram. 25(5), 251-259. doi: 10.1089/cell.2023.0073
- Argunhan, B., Leung, W.-K., Afshar, N., Terentyev, Y., Subramanian, V., Murayama, Y., Hochwagen, A., Iwasaki, H., Tsubouchi, T.*, and Tsubouchi, H.* (2017). Fundamental Cell Cycle Kinases Collaborate to Ensure Timely Destruction of the Synaptonemal Complex During Meiosis. EMBO 36, 2488-2509. * corresponding authors
- Leung, W.-K., Humphryes, N., Afshar, N., Argunhan, B., Terentyev, Y., Tsubouchi, T.*, and Tsubouchi, H.* (2015). The Synaptonemal Complex is Assembled by a PolySUMOylation-Driven Feedback Mechanism in Yeast. J. Cell Biol. 211, 785-793. * corresponding authors
- Tsubouchi, T. and Fisher A.G. (2013). Reprogramming and the Pluripotent Stem Cell Cycle. Curr. Top. Dev. Biol. 104, 223-241.
- Argunhan, B., Farmer, S., Leung, W.-K., Terentyev, Y., Humphryes, N., Tsubouchi, T., Toyoizumi, H. and Tsubouchi, H. (2013). Direct and Indirect Control of the Initiation of Meiotic Recombination by DNA Damage Checkpoint Mechanisms in Budding Yeast. PLoS One 8(6):e65875. Doi: 10.1371/journal.pone.0065875.
- Tsubouchi, T., Soza-Ried, J., Brown, K., Piccolo, F.M., Cantone, I., Landeira, D., Bagci, H., Hochegger, H., Merkenschlager, M. and Fisher A.G. (2013). DNA Synthesis Is Required for Reprogramming Mediated by Stem Cell Fusion. Cell 152, 873-883.
- Pereira, C.F., Piccolo, F.M., Tsubouchi, T., Sauer, S., Ryan, N.K., Bruno, L., Landeira, D., Santos, J., Banito, A., Gil, J., Koseki, H., Merkenschlager, M. and Fisher, A.G. (2010). ESCs Require PRC2 to Direct the Successful Reprogramming of Differentiated Cells toward Pluripotency. Cell Stem Cell 6, 547-556.
- Tsubouchi, T., MacQueen, A.J. and Roeder, G.S. (2008). Initiation of Meiotic Chromosome Synapsis at Centromeres in Budding Yeast. Genes Dev. 22, 3217-3226.
- Chen, S.Y., Tsubouchi, T., Rockmill, B., Sandler, J.S., Richards, D.R., Vader, G., Hochwagen, A., Roeder, G.S. and Fung, J.C. (2008). Global Analysis of the Meiotic Crossover Landscape. Dev. Cell 15, 401-415.
- Tsubouchi, T., Zhao, H. and Roeder, G.S. (2006). The Meiosis-Specific Zip4 Protein Regulates Crossover Distribution by Promoting Synaptonemal Complex Formation together with Zip2. Dev. Cell 10, 809-819.
- Tsubouchi, T. and Roeder, G.S. (2005). A Synaptonemal Complex Protein Promotes Homology-Independent Centromere Coupling. Science 308, 870-873.