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Publications

2021

41. Recognition of G-quadruplex RNA by a crucial RNA methyltransferase component, METTL 14. Yoshida, A., Oyoshi, T., Suda, A., Futaki, S., Imanishi, M. Nucleic Acids Res. 2021

2020

40. G-quadruplex-proximity protein labeling based on peroxidase activity. Masuzawa, T., Sato, S., Niwa, T., Taguchi, H., Nakamura, H., Oyoshi, T. Chem. Commun.  2020, 56, 11641-11644.

39. Modulation of histone modifications and G-quadruplex structures by G-quadruplex-binding proteins. Oyoshi, T., Masuzawa, T. Biochem. Biophys. Res. Commun. 2020, 531, 39-41.

38. Stereoselective synthesis of Gly-Gly-type (E)-methylalkene and (Z)-chloroalkene dipeptide isosteres and their application to 14-mer RGG peptidomimetics. Okita, H., Kato, Y., Masuzawa, T., Arai, K., Takeo, S., Sato, K., Mase, N., Oyoshi, T., Narumi, T. RSC Adv. 2020, 10, 29373-29377.

37. Oligonucleotide DNA containing 8-trifuoromethyl-2'-deoxyguanosine for observing Z-DNA structure. Bao, H.-L., Masuzawa, T., Oyoshi, T., Xu, Y. Nucleic Acids Res. 2020, 48, 7041-7051.

36. Roles of the RGG domain and RNA recognition motif of Nucleolin in G‑quadruplex stabilization. Masuzawa, T., Oyoshi, T. ACS Omega 2020, 5, 5202-5208.

35. RNA sequence and length contribute to RNA-induced conformational change of TLS/FUS. Hamad, N., Mashima, T., Yamaok, Y., Kondo, K., Yoneda, R., Oyoshi, T., Kurokawa, R., Nagata, T., Katahira, M. Sci. Rep. 2020, 10, 2629.

2019

34. Heterologous production of coryneazolicin in Escherichia coli. Takuma, M., Kuroha, M., Nagano, Y., Kaweewan, I., Hemmin, H., Oyoshi, T., Kodani, S. J. Antibiot. 2019, 72, 800-806.

33. Isolation and structure determination of a new cytotoxic peptide, curacozole, from Streptomyces curacoi based on genome mining. Kaweenwan, I., Komaki, H., Kemmi, H., Hoshino, K., Hosaka, T., Isokawa, G., Oyoshi, T., Kodani, S. J. Antibiot. 2019, 72, 1-7.

2018

32. G-quadruplex Binding Ability of TLS/FUS Depends on the β-Spiral Structure of the RGG Domain. Yagi, R., Miyazaki, T., Oyoshi, T. Nucleic Acids Res. 2018, 46, 5894-5901.

31. Multiplicity in long noncoding RNA in living cells. Kuorkawa, R., Komiya, R., Oyoshi, T., Matsuno, Y., Tani, H., Katahira, M., Hitachi, K., Iwashita, Y., Yamashita, T., Kondo, K., Yamaoki, Y., Ueda, N., Mashima, T., Kobayashi, N., Nagata, T., Kiyoishi, A., Miyake, M., Kano, F., Murata, M., Hamad, N., Sasaki, K., Shoji, N. Biomedical Sciences 2018, 4, 18-23.

30. Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA. Kondo, K., Mashima, T., Oyoshi, T., Yagi, R., Kurokawa, R., Kobayashi, N., Nagata, T., Katahira, M. Sci. Rep. 2018, 8, 2864. 

2017

29. Epigenetics regulated by DNA damage repair protein TLS/FUS. Oyoshi, T., Kino, K. Radiation Biology Research Communications. 2017, 52, 227-238.

28. Bcl-XL-binding helical peptides possessing D-Ala residues at their C-termini with the advantage of long-lasting intracelluar stabilities. Nogami, K., Tokumaru, H., Isokawa, G., Oyoshi, T., Fujimoto, K., Inouye, M. Chem Commun. 2017, 53, 12104-12107. 

27. Supramolecular gel electrophoresis of large DNA fragment. Tazawa, S., Kobayashi, K., Oyoshi, T., Yamanaka, M. Electrophoresis. 2017, 38, 2662-2665. 

26. A simple and sensitive 19F NMR approach for studying the interaction of RNA G-quadruplex with ligand molecule and protein. Bao, H.L., Ishizuka, T., Iwanami, A., Oyoshi, T., Xu, Y. ChemistrySelect. 2017, 2, 4170-4175. 

2016

25. Contiguous 2,2,4-triamino-5(2H)-oxazolone obstructs DNA synthesis by DNA polymerases α, β, η, ι, κ, REV1, and Klenow Fragment exo-, but not by DNA polymerase ζ. Suzuki, M., Kino, K., Kawada, T., Oyoshi, T., Morikawa, N., Kobayashi, T., Miyazawa, H. J. Biochem. 2016, 159, 323-329.

2015

24. G-quadruplex DNA- and RNA-specific-binding proteins engineered from the RGG domain of TLS/FUS. Takahama, K., Miyawaki, A., Shitara, T., Mitsuya, K., Morikawa, M., Hagihara, M., Kino, K., Yamamoto, A., Oyoshi, T. ACS Chem. Biol. 2015, 10, 2564-2569. 

23. Characterization of G-quadruplex DNA- and RNA-binding protein. Oyoshi, T., Long Noncoding RNAs 2015, 57-65.

22. Assessing the biological relevance of G-quadruplexs in telomeres by specific quadruplex-binding proteins. Oyoshi, T. Biological relevance & therapeutic applications of DNA- & RNA-quadruplexes 2015, 72-83.

21. Calculation of the HOMO localization of Tetrahymena and Oxytricha telomeric quadruplex DNA. Morikawa, M., Kino, K., Oyoshi, T., Suzuki, M., Kobayashi, T., Miyazawa, H. Bioorg. Med. Chem. Lett. 2015, 25, 3359-3362.

2014

20. Tailor-made designer helical peptides inducing mitochondrial cell death without necrosis. Nogami, K., Takahama, K., Okushima, A., Oyoshi, T., Fujimoto, K., Inouye, M. ChemBioChem 15, 2571-2576, 2014.

19. Supramolecular gel electrophoresis of acidic native proteins. Munenobu, K., Hase, T., Oyoshi, T., Yamanaka, M. Anal. Chem. 86, 9924-9929, 2014.

18. Analusis of guanine oxidation products in double-stranded DNA and proposed guanine oxidation pathway in single-stranded, double-straned or quadruplex DNA. Morikawa, M., Kino, K., Oyoshi, T., Suzuki, M., Kobayashia, T., Miyazawa, H. Biomolecules 4, 140-159, 2014.

2013

17. Product analysis of photooxidation in isolated quadruplex DNA; 8-oxo-7,8-dihydroguanine and its oxidation product at 3’-G are formed instead of 2,5-diamino-4H-imidazol-4-one. Morikawa, M., Kino, K., Oyoshi, T., Suzuki, M., Kobayashia, T., Miyazawa, H. RSC Adv. 3, 25694-25697, 2013.

16. Specific binding of modified RGG domain in TLS/FUS to G-quadruplex RNA: Tyrosines in RGG domain recognize 2’-OH of the riboses of loops in G-quadruplex. Takahama, K., Oyoshi, T. J. Am. Chem. Soc. 135, 18016-18019, 2013.

15. Regulation of Telomere Length by G-Quadruplex Telomere DNA- and TERRA-Binding Protein TLS/FUS. Takahama, K., Takada, A., Tada, S., Shimizu, M., Sayama, K., Kurokawa, R., Oyoshi, T. Chem. Biol. 20, 341-350, 2013.

2012

14. Structure of noncoding RNA is a determinant of function of RNA is a determinant of function of RNA binding proteins in transcriptional. Oyoshi,T., Kurokawa R. Cell Biosci., 2, 1, 2012

2011

13. Separation of proteins using supramolecular gel electrophoresis. Yamamichi, S., Jinno, Y., Haraya, N., Oyoshi, T., Tomitori, H., Kashiwagi, K., Yamanaka, M. Chem. Commun., 47, 10344-10346, 2011

12. Loop lengths of G-quadruplex structures affect the G-quadruplex DNA binding selectivity of the RGG motif in Ewing’s sarcoma. Takahama, K., Sugimoto, C., Arai, S., Kurokawa, R., Oyoshi, T. Biochemistry, 50, 5369-5378, 2011

11. Identification of Ewing’s sarcoma protein as a G-quadruplex DNA- and RNA-binding protein. Takahama, K., Kino, K., Arai, S., Kurokawa, R., Oyoshi, T. FEBS. J., 278, 988-998, 2011 

2009

10. Identification of DNA Binding Specificity of TLS. Takahama, K., Arai, S., Kurokawa, R., Oyoshi, T. Nucleic Acids Symposium Series, 53, 247-248, 2009

2008

9. Identification of RNA Binding Specificity for the TET-family Proteins. Takahama, K., Kino, K., Arai, S., Kurokawa, R., Oyoshi, T. Nucleic Acids Symposium Series, 52, 213-214, 2008.

2004

8. Sequence-specific gene silencing in mammalian cells by alkylating pyrrole-imidazole polyamides. Shinohara, K., Narita, A., Oyoshi, T., Bando, T., Teraoka H., Sugiyama, H. J. Am. Chem. Soc. 126, 5113-5118, 2004

2003

7. Inhibition of Transcription at a Coding Sequence by Alkylating Polyamide. Oyoshi, T., Kawakami, W., Narita, A., Bando, T., Sugiyama, H. J. Am. Chem. Soc. 125, 4752-4754, 2003

6. Efficient C2’alpha-Hydroxylation of Deoxyribose in Protein-Induced Z-Form DNA. Oyoshi, T., Kawai, K., Sugiyama, H. J. Am. Chem. Soc. 125, 1526-1531, 2003

5. Deglyco-Peplomycin Metal Complexes on DNA-Fibers: A Role of the Sugar Moiety for the Stability and the Orientation of the Complexes. Iiyama, T., Chikira, M., Oyoshi, T., Sugiyama, H. J. Bio. Inorg. Chem. 8, 135-140, 2003

2002

4. Photoreactivity of 5-Iodouracil-Containing DNA-Sso7d Complex in Solution: The Protein-induced DNA Kink Causes Intrastrand Hydrogen Abstraction from the 5-Methyl of Thymine at the 5’ side. Oyoshi, T., Wang, A. H.-J., Sugiyama, H. J. Am. Chem. Soc. 124, 2086-2087, 2002

3. Regulation of gene expression by sequence-Specific alkylating polyamide. Oyoshi, T., Kawakami, W., Bando, T., Narita, A., Sugiyama, H. Nucleic Acids Res. Supple. 2, 259-260, 2002

2000

2. Mechanism of DNA Strand Scission Induced by (1,10-Phenanthroline)copper: Major Direct DNA Cleavage Is Not through 1’,2’-Dehydronucletide Intermediate nor β-Elimination of Forming Ribonolactone. Oyoshi,T., Sugiyama, H. J. Am. Chem. Soc. 122, 6313-6314, 2000 

1999

1. Photoreactivity of 5-Iodouracil-Containing DNA-Sso7d Complex. Oyoshi, T., Sugiyama, H., Wang, A. H.-J. Nucleic Acids Res. Symp. Ser. 42, 171-172, 1999